The solution appears to be modifying start-up options in the JVM. This can be done by running tomcat6w.exe (on Windows anyway), going to the Java tab, and adding these options:
-XX:+UseConcMarkSweepGC -XX:+CMSClassUnloadingEnabled -XX:+CMSPermGenSweepingEnabledWhether this is a solution remains to be seen, but I am giving it a go.
See also
http://docs.oracle.com/cd/E13209_01/wlcp/wlss30/configwlss/jvmgc.html
http://stackoverflow.com/questions/3334911/what-does-jvm-flag-cmsclassunloadingenabled-actually-do/3334954#3334954
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